Transfer / adb pull that patched boot.img to your PC
Reboot to fastboot adb reboot bootloader and temporarily boot from the patched boot.img fastboot boot /path/to/patched_boot.img Do not flash that boot.img!!!
Wait for the device to boot (took a bit longer than usual)
Open the Magisk app (press Cancel when asked to perform Additional Setup), choose direct install and reboot
After OTA Update
Download and install the update Do not reboot yet!!